Enriched custom Gene Ontology terms in a set of genes, from a dataframe giving Go terms to genes matching
enrich_go_custom( genes, universe = genes_to_GO[, 1], genes_to_GO, qvalue = 0.1, pvalue = 0.05, GO_type = "BP" )
| genes | list of gene IDs, as present in the first column od genes_to_GO |
|---|---|
| universe | list of gene IDs as background, default is set to all the genes contained in genesto_GO |
| genes_to_GO | dataframe with gene IDs as first column, and GO IDs as second column. gene IDs must be the IDs present in your gene expresion file |
| qvalue | qvalue cutoff for enriched GO terms, default to 0.1 |
| pvalue | qvalue cutoff for enriched GO terms, default to 0.05 |
| GO_type | character between BP (Biological Process), CC(Cellular Component) or MF (Molecular Function), depending on the GO type to use in the analysis |
dataframe containing enriched go terms and their description