Get gene IDs loci, without splicing information

Source: R/fct_geneIDs.R

Get the locus IDs from splice variants IDs (remove the .1, .2 from a list of gene IDs)

get_locus(gene_ids, unique = TRUE)

Arguments

gene_ids

list of gene ids with splice variants information
unique

boolean, weather or not to return unique locus vector

Value

character vector of gene IDs without alternative transcripts information

Examples

splice_variants <- rownames(abiotic_stresses$normalized_counts)[1:20]
get_locus(splice_variants)

#>  [1] "AT1G01010" "AT1G01020" "AT1G01030" "AT1G01040" "AT1G01050" "AT1G01060"
#>  [7] "AT1G01070" "AT1G01080" "AT1G01090" "AT1G01100" "AT1G01110" "AT1G01120"
#> [13] "AT1G01130" "AT1G01140" "AT1G01160" "AT1G01170" "AT1G01180" "AT1G01190"
#> [19] "AT1G01200" "AT1G01210"